Except the purpose of the section is to say that R&E has to be amortized. So it seems pretty clear to me that software development costs have to be amortized.
Not one mention of "software" in that article. It's clearly written in a general context where this may be true. They don't mention c(3) at all:
"For purposes of this section, any amount paid or incurred in connection with the development of any software shall be treated as a research or experimental expenditure."
"For purposes of this section" to me means you don't have to justify software development as R&E if you define that software development work as R&E.
Being pedantic, but it's R&E not R&D.